miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Helianthus petiolaris



ABOUT THIS RECORD

ID: MNEST046070
species: Helianthus petiolaris
miRNA family: MIR166
source: microPC, original name: miR166

Taxonomy by NCBI:
Helianthus petiolaris Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGGACCAGGCTTCATTCCCC

miRNA*
GGAATGTTGTCTGGCTCGAGA

mismatches: 4
bulges: 0

View larger
pre-miRNA
GGGGAATGTTGTCTGGCTCGAGACCACAAGAAAGCTTCAATCTTTATAATCTTTATGTTACATAATCACATAATTGATCAATCTTTGTTGATCAATGATT
AAAGATTAGAATCTTGTGTTGTCGGACCAGGCTTCATTCCCC


dot-bracket secondary structure
((((((((..((((((..(((.(.(((((((....(((((((((((..(((..(((((.........))))).(((((((((....))))))))).))))
))))))).)))))))))).).)))..))))))..))))))))



SIMILARITIES
miRBase sly-MIR166b: 0.00000003

PMRD sly-miR166b: 0.00000003

microPC miR166: 1e-75
UniProt no hits

RFAM mir-166: 0.0000005

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record





Liczniki na strone;